PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_538993FFD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 525aa    MW: 58980 Da    PI: 7.8372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_538993FFD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14361141297
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            k + +++p++  ++    ++ s t++l +++gr+++v +  +   g+ vl++GW  Fv a++++e+D+++F ++g+s+f   +++f
  Traes_4AL_538993FFD.1  36 K-NSIRIPRELSTHLR--SRISDTIKLDTPNGRTYDVVV--TWEFGELVLRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114
                            3.45999*99874444..45888****************..556667****************************9999..66666 PP

2B338.32.3e-12203288998
                            HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             + k + + +p + + +h +++++s  ++le + g+ ++v+   +k+s+  +vl++ W  Fv an+++ +D ++F+   + +++l+v 
  Traes_4AL_538993FFD.1 203 VNVKDCSINIPLRLV-SHLKEEAGSAIIKLEAPGGNIYNVRA--SKHSEDqVVLQSDWDAFVAANHIQLNDLLIFHS--KGKTRLKVL 285
                            46678999******9.776678999*****************..7777777*************************3..356666776 PP

                            EE- CS
                     B3  96 vfr 98 
                            +++
  Traes_4AL_538993FFD.1 286 ALD 288
                            665 PP

3B337.15.5e-124395091890
                            --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                     B3  18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            ++ +f++e+   + + +++tl+   ++ + W  +l    k++r ++ +GW++F+ +n+L+ gD+++Fk+ +r+++
  Traes_4AL_538993FFD.1 439 FSLEFCAEYasTL-PSRDQTLI-LELEDKDWHTTL--HIKGSRKIIYRGWSKFACDNNLQLGDICLFKMAERRTR 509
                            4578999997533.34555666.556889******..66666678999********************8755333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-1722119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2124117IPR003340B3 DNA binding domain
SMARTSM010194.9E-527117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1727119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-1435115No hitNo description
PfamPF023622.5E-1236115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-16185298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-15188292IPR015300DNA-binding pseudobarrel domain
CDDcd100177.60E-14192288No hitNo description
PROSITE profilePS508639.502195290IPR003340B3 DNA binding domain
SMARTSM010190.0015197290IPR003340B3 DNA binding domain
PfamPF023621.0E-9203286IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-15418521IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-16418521IPR015300DNA-binding pseudobarrel domain
CDDcd100176.00E-13423519No hitNo description
SMARTSM010190.0022425521IPR003340B3 DNA binding domain
PfamPF023624.7E-10434511IPR003340B3 DNA binding domain
PROSITE profilePS5086310.095459521IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNGDCENCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNSIR IPRELSTHLR SRISDTIKLD  60
TPNGRTYDVV VTWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSRGCE  120
KMASCFQPPS EIFGAFPPSE PCDHHVLNAA PNPRHVQTQV EFDYTMSTGC YLTKSQDEKV  180
VEIARKIRSE IPLYVAIMKK LNVNVKDCSI NIPLRLVSHL KEEAGSAIIK LEAPGGNIYN  240
VRASKHSEDQ VVLQSDWDAF VAANHIQLND LLIFHSKGKT RLKVLALDPS GCEKNSSCFD  300
TKKISKTGEG SVQITDARPC TVEIIDLTSS DDDHTEREDA GRSSGRRKQV PGSHAKAWKM  360
ASASSPSTKS GSDTHKLKHP ISNNDNLQGP SRPPYILARG VTLTGRVEKK VQEKVQAIGS  420
ELPIYVAVMT KSCVGGNLFS LEFCAEYAST LPSRDQTLIL ELEDKDWHTT LHIKGSRKII  480
YRGWSKFACD NNLQLGDICL FKMAERRTRG LAMRVHFICK SGVFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5DP400.0W5DP40_WHEAT; Uncharacterized protein
STRINGMLOC_16480.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-22B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]